Scaffold Ga0307474_10000139

Overview

Basic Information

• Taxon OID: 3300031718
• Scaffold ID: Ga0307474_10000139
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 53106
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (70.21%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005890	Metagenome / Metatranscriptome	387	Y
F051804	Metagenome / Metatranscriptome	143	Y
F069867	Metagenome	123	Y
F102903	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307474_100001393	F005890	GAGG	MSFHATNPASFSYLSSCAVESANKSLSTRNYGGELRPSYGGTCPSNRTAIAVNFRSQCADDNLALERVCRYVSRLLLGHSFGAFPAPGGTRSSASHNAPLRGLGSSQNKFENHGKERLSNFFRAPPRKQTFGTWEPGPLAKLCPV
Ga0307474_1000013934	F102903	AGAAGG	MPKPWVELKEAHGRVVKRMNVAYDEEYVAVEVEFEDGYSMNVDIIPAVQIRPQFQHVGTGDARIVRSYTSRISVAGGLKIRSR
Ga0307474_1000013936	F069867	GGAGG	MSQRIYEYPEVIGKTVAKVTVANESDWHNISVKFTDNTAIHFSIRSFMQFEPEHINWTTGNGKILRSYPFVRQREG
Ga0307474_1000013937	F051804	AGG	MAKQVVSTTLMIEILGPKDASAKRIRFVEGILRNCIKSLDKDFRQSRIPQMKGFSLRPEKDLRKRRKR