Scaffold Ga0307474_10000134

Overview

Basic Information

• Taxon OID: 3300031718
• Scaffold ID: Ga0307474_10000134
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 54942
• Total Scaffold Genes: 74
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 59 (79.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000540	Metagenome / Metatranscriptome	1043	Y
F014401	Metagenome / Metatranscriptome	263	Y
F016428	Metagenome / Metatranscriptome	247	Y
F028236	Metagenome / Metatranscriptome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307474_1000013429	F016428	N/A	LVAVELAARKSPKQHEPSCGLAVVLLAGRRIEVHPDFDTTTFERLVGIRERA
Ga0307474_1000013444	F014401	GGAG	MKTGTLGPPDKRLWVQFFKAALFELDASKVSDRIAEAETALLTRARELLDSAGDNIEEEQAVDDAMYASHALRSALKCRANAKSTSGDLAA
Ga0307474_1000013450	F028236	GGA	VLVKHFYSDSLVKSHTPVIIPFDERVIFVCLLNRAEFSSRLPEISQILDPISGTQFLVGGRRFGKRRLLGTV
Ga0307474_1000013459	F000540	GAG	MAKKKAVSVLRKLTEVEQDLLSYMQQGYQLETDSLGGNPVLRHLKDNEEIRPLSANRNTIKALEKRGLIGPDKGRDPLTILWRLKGKK