Scaffold Ga0307474_10000019

Overview

Basic Information

• Taxon OID: 3300031718
• Scaffold ID: Ga0307474_10000019
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 154967
• Total Scaffold Genes: 135
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 100 (74.07%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000151	Metagenome / Metatranscriptome	1897	Y
F000893	Metagenome / Metatranscriptome	846	Y
F001021	Metagenome / Metatranscriptome	804	Y
F001950	Metagenome / Metatranscriptome	613	Y
F004611	Metagenome / Metatranscriptome	431	Y
F005523	Metagenome / Metatranscriptome	398	Y
F050635	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307474_100000191	F005523	N/A	FATTVLIFFIAGLLYLLRFERVDNLGAYRIPPETGILIPSDCSG
Ga0307474_10000019128	F050635	GGAG	VKKTLVASILGFIVLATAVSTLAADRSNLILGDREVIVKHPSKVTTPAAPRDPALTTIAGTLSDYPYGVYFCCYGYYVTGLTNELGVVPEYWQGVPFTPAANMTVKEVEASVVWAEGTNAVVLTLNEDSGGLPGKAIHTWNVKNLATIGSCCTLATGKSQAGIPVTKGTQYWLVVKTNGNDTNIFAAWEVNSTDMRLHPFASYCDDSKQGSCNGTSGKWTATSDILPGFAVLGQ
Ga0307474_1000001941	F001950	N/A	MLFDAEFSHINALGRYDKTPSHAVEDRCIQKAKVHGSFVAVQTNKSVRPSSLQFPDRYVTQTPHCCRIFVKRGRYQFFSEAVPTENEMRNLRKGSKVLASETESTAELKGGFRRHSSVASHAFFYLIVLLFSSLALFGQTNEFQPDSSTGAGKILVHSKFGGQIFGFDIDQNGIEGLLSESQTLANGNVLAAVETFDQKTGKILKVVTKTETQDDFVTLGIVGTSVGLIEHEHVVSLFHVKRTFHILNPLDGNQFTGLWTPPIGTKHLIEPTGVSRSQGVPNVAVFAIDNSGQFIPYVFSSNVAANTFGPVVKITDSNNFGSVPPPMAFDSKTSQAVLGGGNGCFGCLPVIGVADLAKGTFKEFTGIGFGFINGIAIDAADAIACTTTEDDASVEFYDLKKQSGFLVVLPNSNGQQFFSGNDVEFDPTHKLFLVAQENSSSSSSGSTIYVYDTKGNLKETLNGFNFNNTFNIIPMHIALNPSKRSGFVDGPDPGVTDIQSFTY
Ga0307474_1000001962	F000151	GGAGG	MQYEVSGKNGTGNGTLLRNGDPHVHEVVKAAHEELRQLMRQRAEIMKRIGTLKQTISGLANLFGDDILGEDLLELVDRKTGGRQPGFTKACRMVLMEAGRPLAVREVCEQIQQRLPAVLLRHKDPLASVTTVLNRLVEYGEAMSVVRENGRRAWQWAADPAFVEQRNQVSQL
Ga0307474_1000001967	F004611	GAGG	LKALYKGGDALLVPDSPSNSRRWTVIASALLCCGLGLVVIYTKRSAFFSPLAVVVVAAIGLAAVLLQLRYYNREHSNPVHAPVWLNVLGLLFALIALFADFLGLSWQIAEVMALGAVGSFAISSAMILHAFRRHRTMSK
Ga0307474_1000001990	F001021	AGGA	MKKTIAVSVLSVCLSFAAGIAVGQARDWHDLESVHHHIEEAIHEMENARATNHYDMAGHGAKAEEHLRLAEHELHDAIESAKRDGR
Ga0307474_1000001997	F000893	AGGA	MLPIHAKIDRTQRLLRMLEEDAPLLAVRIAPLTPERQQSAKDYAARLTAHARAELEKLIEEGSFWDSNDSTPQAAD