Scaffold Ga0307474

Basic Information
Taxon OID	3300031718 Open in IMG/M
Scaffold ID	Ga0307474_10000004 Open in IMG/M
Source Dataset Name	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	239778
Total Scaffold Genes	199 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	157 (78.89%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

239778

Total Scaffold Genes

199 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

157 (78.89%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location Name	USA: Indiana
Coordinates	Lat. (^o)	39.0844	Long. (^o)	-86.4705	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Indiana

Coordinates

Lat. (^o)

39.0844

Long. (^o)

-86.4705

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009102	Metagenome / Metatranscriptome	323	Y
F011862	Metagenome / Metatranscriptome	286	Y
F027340	Metagenome / Metatranscriptome	195	Y
F049914	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307474_10000004141	F049914	GAGG	MRKRRLSGGFICLGMLVFANLAVWAQASKDGVIAINGGRNTLLLRAPSQIFTPAVPPSSKLITIYSNLGRDKNVYNAIAGDGILGPDAGQPWPQSVGCGFRPKADHIVTEIQVGATHVQGTNTLVVSLNQDNNGIPGKVLHTWHFSGLPVFGSCCTLQTARYAQGIKVRKGKLYWVVLSPQKKFTDTYDVWNNNFSGLQGTFSNNMGSGWNSSYQVLGAFGIFGK
Ga0307474_10000004168	F011862	AGGAGG	MSDARNGRAFVGVLTVLFVLSAATELYPADKTSLELSGDSIIRIVTQIQRADYEGDRPTLKRLHDELTRIPGGNKLASRVLYWRGFALWRRAINGFNETPTPKDLEEDLTQAATDFKDAIALDPAFVEPKIGAGSSLGYLMYLHRKDPTRVQELLQQSSQLLKEAMATAPDNPRLLWVLGPIRWSSPPERGDGQEKAFESYNRGLESVRNQKRDASDPLEPSWGEPELLMSLAWSNLNRTTPDLNAAEQYARAALKMVPYWHYVRDILMPQIRAVQAKATKG
Ga0307474_10000004183	F027340	GGAG	MLRQMAVFAAAIVLALAILGLDVSNKPASTAGPWQVDTRHSSAKLTTDATTDYGKTKITVALGYGRVNGKVKIDDDPAKGSVDLQVYPATSMAPPIGEDGKFLSHWLENMSNHTLVCFHSKKVVRMPDGRLQATGELAVTRVDRNVEAASTEAYAGPVYGPPIVHRVSREGTFIFDLPAANGNGQNDSGIQASASTRVFGEDFPQLVKTVVNTYWPVLVQDQSCQTPAVGEAYSGTQCTGTFMMSPGLPEAPHAANAEDLPGPPNFNTIVGENLTILVQMHLVPKPTGEQAAARN
Ga0307474_1000000425	F009102	GGAG	MTYLYAAYIATWVIHVAYLGTLLRRYTRLRNEIAEFKGRVEEKN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307474_10000004

Overview

Ecosystem & Geography

Associated Families

Sequences