Scaffold Ga0310813_10025790

Overview

Basic Information

• Taxon OID: 3300031716
• Scaffold ID: Ga0310813_10025790
• Source Dataset Name: Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4084
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States

Source Dataset Sampling Location

• Location Name: USA: North Carolina
• Coordinates
  • Lat. (^o): 36.0
  • Long. (^o): -78.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001356	Metagenome / Metatranscriptome	716	Y
F002523	Metagenome / Metatranscriptome	552	Y
F016609	Metagenome / Metatranscriptome	246	Y
F044177	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310813_100257904	F016609	AGGAGG	VTEYKWYEIYQAALLETDWSKMEGRIQAVEAAFNERKNEFALNHGGTPEENRAIENALRGLNVLRTEVATWQRSKRAG
Ga0310813_100257905	F001356	AGGAGG	MVRNPRAEGKAPDLKYRQVKVDSLDKRRRGKHHDLVQGILQELETLSPGSAMQIPLADVGGIGLANLRAAVHRASTTHGLEIETVADEKNFYVWRKKKDE
Ga0310813_100257907	F044177	AGGAGG	MRENREKWVELCAQAATEQDSRKLMALIDQITALLDAKQQRLSEKDSQRLKSEPTGQRNSQRVGASP
Ga0310813_100257908	F002523	GGGGG	MLVIVSVRRLDNDRIEIGVRKPQHDSNPTQNYASENELRAVLSDFGIGQEEIDSHLKLLAQMGANEQLKFAPMDVAQNELLSRGFQL