Scaffold Ga0307476_10000847

Overview

Basic Information

• Taxon OID: 3300031715
• Scaffold ID: Ga0307476_10000847
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20771
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (91.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000612	Metagenome / Metatranscriptome	985	Y
F003165	Metagenome / Metatranscriptome	504	Y
F026939	Metagenome / Metatranscriptome	196	Y
F080279	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307476_1000084710	F080279	GGAG	MPIFDFFLAALSLAPVGLFLLFWRIFPRDRGIHPIYRESGTETRGERTESQDVTARRLHMKEVGRKCKIA
Ga0307476_1000084720	F000612	GAG	MKDLPIIDQPRWPAMDAETTPAFLDFKLVFKATDEPVKYEDATRQYRFTGFKANAELETTVRMPSIDFVFKTDPLENSTCDFAVMGEEVNGKYYP
Ga0307476_100008476	F003165	AGGAGG	MAKVIEFYVPKNFRKPLKWASALQCGTIIEFCSPTKKSA
Ga0307476_100008478	F026939	GGAGG	MTPQTSQTDTNLQAELDRLTYSAYLLTLDPGKAFSAVERAIDGSLEETTVHSDLLERTVELALEDILCESRTSWDGESSAYDVVLYGHSQAINSKAFQSLQDLNGSPILLLDATSRIVFVLHHLLGYEIGDAAAKARLTEKQYRAQLRRAYVQLASFRLQDGTLASHGAEQSAPTWERKYELVEMDSCLLV