Scaffold Ga0307476_10000543

Overview

Basic Information

• Taxon OID: 3300031715
• Scaffold ID: Ga0307476_10000543
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28177
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (84.62%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004246	Metagenome / Metatranscriptome	447	Y
F006203	Metagenome / Metatranscriptome	379	Y
F015646	Metagenome / Metatranscriptome	253	Y
F025539	Metagenome / Metatranscriptome	201	Y
F026942	Metagenome / Metatranscriptome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307476_1000054323	F025539	AGGAGG	VSSSVHTALSENDWHLDLVHDLRSQSLPGDPSIDDPVNDTGLGLRCGDLQVRVSLLVS
Ga0307476_1000054326	F006203	GGAG	MLESIVELLGGLLLSALPLLIGSCIVGSIIAALRAVSGGS
Ga0307476_1000054327	F015646	AGGAG	MKTSFVLSLTCLLGLGGSALARDNAHSVEISNAVQIGGTELKPGDYKVEWQGTGPAVQVSFQKNGKTVVTVPGTLKTDDDLVKQDAIVTEATGAGTSTLKEIDFRHLKQALVFDQDLGSM
Ga0307476_1000054331	F004246	AGG	MLDDSDERDDVVAAASICPVPDCGALVVSYRPPERTGRDNARSSCEFTCPHCLIDFSVPEDELIFQSVPKEWLLARVQAA
Ga0307476_100005436	F026942	GAG	MTGNTEGKARKSPIRTGEVELLESLAQRRACGDQDREIACSDARALVRGVRNVLLTVLPLWLALAWWLAR