Scaffold Ga0307476

Basic Information
Taxon OID	3300031715 Open in IMG/M
Scaffold ID	Ga0307476_10000261 Open in IMG/M
Source Dataset Name	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	47300
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	33 (80.49%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

47300

Total Scaffold Genes

41 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

33 (80.49%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location Name	USA: Indiana
Coordinates	Lat. (^o)	39.0844	Long. (^o)	-86.4705	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Indiana

Coordinates

Lat. (^o)

39.0844

Long. (^o)

-86.4705

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002108	Metagenome / Metatranscriptome	592	Y
F002480	Metagenome / Metatranscriptome	555	Y
F006072	Metagenome / Metatranscriptome	382	Y
F011500	Metagenome / Metatranscriptome	290	Y
F043595	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307476_1000026110	F002480	GAG	MSGLPQPCSQWRVPRAHLESNTPAVLRFPDGQRTSANLQVISLTGGLLSLPQPVDQGSRVKVMFLTGEGSVLGGAEMLRPVSDALQPFRFVSLAADDQRRLGTLIWQQSNQNKSEEEWIEKLRAASANREEPRPWRFKLAGAVGLLTVGLATAAYLLHFGILK
Ga0307476_1000026114	F011500	GAG	VQVPVTVTSMDRRNPFSATCDALVVSAQGCGLRASQALPLETPILLSNLPGGASASARVASCLPLGHDGKQFLIGVSLYNPGNIWGITDPPQDWDCDPSAAASPGNRTSKSANVWPYNVFSAQGEARPGRK
Ga0307476_1000026115	F002108	AGG	MTQTAEQIALEASSARLEKGTPRPFRVKLRGSILTLIRLPNRRQVRGKLHQLSSTGGLVNLDKPLDEKLVVEFIFHLGETTIREKAQMLFPMWATQGWLQPFRFIDMPEASKSTLETSLTAFMQGLTDPNNREQ
Ga0307476_1000026130	F006072	GGAGG	VSKTAAVVLGFLSFILFANISRAQLIPSGNVYVGVSESDSVDVVNRYTFRGWAASAEDMPFPRYSFFGAVVDTSGYYRKGIQQYDLLLGPRVSHNYGKWRPFVHLLGGFQRETSDGVTHYIVAEDVGGGVDRKFHLLFLHNFSWRLQFDYVHTRLLSANQNEYRGSAGLVWRF
Ga0307476_1000026139	F043595	N/A	MGILFYFGIFYLAGLAQWMVLKRITKEVNQHLPDSEQYVASIWAFSPKSVRSPINEIKVWRLHRQLFRESYLPWVHLATWVLMIVFFLLCVQFDRSHSVAHPGVVVLTPRFH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307476_10000261

Overview

Ecosystem & Geography

Associated Families

Sequences