NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307476_10000227

Scaffold Ga0307476_10000227


Overview

Basic Information
Taxon OID3300031715 Open in IMG/M
Scaffold IDGa0307476_10000227 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)53941
Total Scaffold Genes67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)51 (76.12%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015004Metagenome / Metatranscriptome258Y
F020232Metagenome / Metatranscriptome225Y
F045388Metagenome / Metatranscriptome153N
F066033Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0307476_1000022753F015004GGAGGMRTVKRLALIAVGYALCVAAGLAAVTVNELRMPADVAQGSPGMVAFGDMILFVLVTGFFGLAPTWFLLKLFIEKAPRALVAVELVVAAMGLASWLAVMHMAGSSSPPTFPVAVSQLLGLFIAFVAIPRMVFGPVLLVIEAVTFLLVRGRVTRALLAVAMLMDLVPLGLFALHMLRVTRY
Ga0307476_1000022754F020232GGAGGMAEPTAEPIPPDFAEAFAHAVLVYEIWTPEELGRLIEIGSRSYSIVEVCGLVDHFTDRLPERVYLKLRSQMHDYPDSKLKADLAADPSYATAVRCLRGMIERRTEDYKQRGGMAG
Ga0307476_1000022755F045388GAGGVRSSQLTDDDLWRVIADNTDAMSMLIEKQFELDGEMGAPDPDSRQKLMLFNVQAIDNFDRQYRDCIAEIRRRYPSI
Ga0307476_1000022756F066033AGGCGGMTTQSRAVLQRILQRRTNWAPAGESFGCPRCHAKYAVIRRQTPPGMIPACETCDQEFPAAEGGEWLLYERTDA
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