Scaffold Ga0307476

Basic Information
Taxon OID	3300031715 Open in IMG/M
Scaffold ID	Ga0307476_10000147 Open in IMG/M
Source Dataset Name	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	67971
Total Scaffold Genes	66 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	50 (75.76%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

67971

Total Scaffold Genes

66 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

50 (75.76%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location Name	USA: Indiana
Coordinates	Lat. (^o)	39.0844	Long. (^o)	-86.4705	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Indiana

Coordinates

Lat. (^o)

39.0844

Long. (^o)

-86.4705

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007229	Metagenome / Metatranscriptome	355	Y
F011165	Metagenome / Metatranscriptome	294	Y
F033129	Metagenome / Metatranscriptome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307476_1000014711	F033129	AGG	MADRWSNAAGNSSFRFFSPEQIDRILCEGVKRGRTGSHRAIERILKHEPGLGRAELWRRIRQLKQPSNGKVYQRIAWSSEDDEILRKGYEEGWKGKHEAVRELLRWHPGWQPHSIWGRAAKLGLVQKSPKKTRQRSRQPWTEDDDRILLAMAGYKTAEFIAKVLHRSENAVRYRLAVLGKSSRVHLEGYARRTLAQELHLGSRTIQRLIVQGLLEVRDPRITRKSLEDACKTGRLTASLHDQLPDVKESAAIPHEEGPAATPATNSIPVAPGDLSKPPRSCRAKRIWADVARQFSADASVIEQLIFRGVLKLYDPRVTEKSLTKLCGRYGALIKTDFLDAETRDWLAGSMDLAPAAGKVVAQRMEAFRQHALVVRTCEHCGRAIRGNVYFRHHKRCPQRDARTESKVSVSKRTQSAEEAGGK
Ga0307476_100001474	F011165	N/A	MKTAKFSKLERRVGHIASRQARRQLMQVPWDRFRKAYDEYLRWQAFVLWARAILELEGSAPSWLEAILRKRCPGFMEEVARSNKPKLLGLALLSWVHNRAFGFAKEEGWLDVLVFYGFRDARSQGYWTYWEHRNNEWRKRRPASFPTLVQWRRSALNWKLQGDVSCAAVAKAVEKYLDFEAFVYWLRPLFQTSKSQLPTHIALELEQECPGLFEFASREIAAAYEHKSKSWQRLFNWGRDHILSRANKEGWLDCVLRQVRIHPRHVRTMVYAAFWHRSRTDNPVSPHPSFGEWRRDSESYVRTNRK
Ga0307476_1000014764	F007229	AGGAG	MALIPKVEPKQEKKVVSARLDEEAHTMLQRYAAFLGGATHEYIIGESLKRLFRRDREFNKWLEENHGATTTSSDRSQTPTATAKNATRPASTAA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307476_10000147

Overview

Ecosystem & Geography

Associated Families

Sequences