Scaffold Ga0307476_10000121

Overview

Basic Information

• Taxon OID: 3300031715
• Scaffold ID: Ga0307476_10000121
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 82272
• Total Scaffold Genes: 107
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 81 (75.70%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003293	Metagenome / Metatranscriptome	495	Y
F003630	Metagenome / Metatranscriptome	476	Y
F004246	Metagenome / Metatranscriptome	447	Y
F011101	Metagenome / Metatranscriptome	295	Y
F015646	Metagenome / Metatranscriptome	253	Y
F025539	Metagenome / Metatranscriptome	201	Y
F048518	Metagenome / Metatranscriptome	148	Y
F052808	Metagenome	142	Y
F085999	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307476_1000012112	F025539	AGGAGG	VSRSVHTELSRNDWHHDLVHDFPSQSLQDDPSIEDPVNDTGLGPRCGDLQVSREFTS
Ga0307476_1000012115	F085999	AGGA	MKAIFKVRTLTCVELAVGALLSTPGADASDTDSHPSYLPAKVMAHLPLSGGIRQMFLQQEGKRQFLYVQQPLQQGVTVIDITKPERLKVVSQVPLDNLTMVSFGLAIFETPENSSTVGASLATGNGEGPHGSGVVESVRVLEVSDPAHPPTVQNFDGVTSILQDSARNLFMSRMEMESGCCHTSK
Ga0307476_1000012116	F011101	AGGA	MKRRGITFASAAFFVTSLALASDTWILDAGTSNARLFKCPRANSGLVSLGVARVTGKVKLNTNDLDASFFDLTIYPADEGWGQALSPEGALPIGYVPDATDPTLLTFKSTHILRTWSGRLEVVGDLTLTHVDGVATASPTEAYAGPVYGDPVVRNETREITFVFPSVSAEHLSEPLTASTVQKRGVLEIVGSARVEREEFSKVLGAKKETSWPPVVQNKDCHMPSTVGEGYSGASCTGTVVAATYDSSCDVPASAGEDYSGPQYILAMGNQTTIVLDLKFLHKVPEPSVEAHSGADWNTAPADRQVKLTKAR
Ga0307476_1000012117	F015646	N/A	VLSLTCLLGLCGSVLARDKAHSVEILNAVQIGTTELKPGNYKVEWQGTGPAVQVSFQQNGKTVVTAPGTLKTNDDQVTQDAIVTEETGVGMSTLKEIDFGHQKRGASV
Ga0307476_1000012134	F004246	GAGG	MLDDWDERDEVVAAGSICPLPDCGALVISYRPPDRTGRINAKSWCEFTCSRCGIDFAAPEDELIFQSVPKEWLLAKVQAA
Ga0307476_1000012135	F003630	GGA	VFVLQERSLPGKLENSFSPQNLPFNLETWRQGGLRYFVIGDASIADIDSLAELFKAA
Ga0307476_1000012137	F048518	N/A	MMNALKFGISVLSLAAVCFAQEGLTIDNKHKERVSAPEVEKIYSSACSVVQREFDLWHPLHPQVRLVLGADKNEIWFVGREVRLTKWDRYAFAQRVVWLAFEDLMPSQQRLIIAKRAVSWADSTVEIERLAK
Ga0307476_1000012145	F003293	N/A	MKDERDRISPGMARRPDKREAEMLSEENLKELRYNLAHLSLPAVRDFYETAHRDCRLVYDHLPSPRQIQTLVQVWKQLWKWR
Ga0307476_1000012160	F052808	AGGAG	MTRKDFNLIAETIRLLPSFETYERDGKLYPTDVVNFSAVCRRFAEALATTNPRFNADRFINACNGKGR