Scaffold Ga0307476_10000031

Overview

Basic Information

• Taxon OID: 3300031715
• Scaffold ID: Ga0307476_10000031
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 154833
• Total Scaffold Genes: 170
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 145 (85.29%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Associated Families: 13

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000042	Metagenome / Metatranscriptome	3762	Y
F000309	Metagenome / Metatranscriptome	1327	Y
F000801	Metagenome / Metatranscriptome	886	Y
F001083	Metagenome / Metatranscriptome	783	Y
F001854	Metagenome / Metatranscriptome	626	Y
F002552	Metagenome / Metatranscriptome	549	Y
F003165	Metagenome / Metatranscriptome	504	Y
F005961	Metagenome / Metatranscriptome	385	Y
F008377	Metagenome / Metatranscriptome	334	Y
F016079	Metagenome / Metatranscriptome	250	Y
F018587	Metagenome / Metatranscriptome	234	Y
F037373	Metagenome / Metatranscriptome	168	Y
F071530	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307476_10000031103	F008377	AGG	MNETESQQWYQLYASAVVELDPERLMERVNATEAAVHSRLRDLQYDSDHREERQLMEDALRTLDLLRRCP
Ga0307476_10000031123	F005961	N/A	MMRDGGKNPFMRILLFAGLLLAALGIASLVVPIPRSENHGIKAGDIDIGVQTSHRERVSPFISAVLIAGGIAMTIAGARAGRSKN
Ga0307476_10000031136	F037373	AGGAG	MAYVLRHLINDGILVDLGERLSGVGPFDSREAAEQRLSELERDKNNGKFSIEELVLSSDQPAGLAKG
Ga0307476_10000031138	F001854	GGAGG	LKTLLFAILSLYFALSVVIALSQDAPNQAAKNPSDIGARLTIVMGTVEEDGDKLRFVTEQRAWKVDNPKTLKGHEGHYVHAEAYAYPDKNLLHITQVKIPTPRETREADIK
Ga0307476_10000031140	F000801	GGA	MADHEWTVKELIEALKNFPSEAKVYYEMGPNGAGTIGKAQYVKARGEEDELGVLLDR
Ga0307476_10000031151	F000042	AGGAG	MTNIKFVVKVSRGGTRAPAYVQRIDRLPVQMTTNRKLALMMGKFTAEDAIKAIQNSQCVPELVPVQVNAQ
Ga0307476_10000031153	F001083	GGA	MYMNERQLAISVLEGLREDLTYAHLNNGSRIVDVADLRQYIYEQISRIRTNAYFISALYGNNDGKGQGTSKGPGHNGKPQS
Ga0307476_10000031155	F000309	GAG	MKTDRSFDHVLESAVISSWTALTRGAQTGLIHIEYGFAPGGTLDYLKIWSSLTRGRWLLACEYWMSPSTFHNTGVRFDNGYESEELAHILEFVMQHQNSFVLPPNLGRQGLLQISTPTVEENAAAAAIINGNFARLASSHAQPAVA
Ga0307476_10000031160	F018587	GAG	MTSISHPFLPRMRSLRAFLAASLRKFLKMEPHDGDFASQRMCPSCGLITPRHETRCLECGKSFKPA
Ga0307476_1000003137	F016079	GGA	MSKAAGQQSTKTLSRVVDLLVEHRIKLDALEHILKETNPLVHELYLGTIENLQAQRASEVNRVLTQTLKSKLTER
Ga0307476_1000003143	F002552	AGGAGG	MDGNYVFLCGVMWCRFGQQDAGKELLRATNSVDPDVKALAWAMLAKGARRLRDLERQTPTGSRAILEGNLCG
Ga0307476_1000003145	F003165	GAGG	MAKVIEFYVPKNFRKPLKSAPGLHCGKIIEFCSPTKKSA
Ga0307476_1000003190	F071530	AGG	MKIIWRNRNPINRTSFSIVKTLGVEQPDELRVFYRSSRGTAALGTIFELLVNRDAASREA