NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307476_10000025

Scaffold Ga0307476_10000025


Overview

Basic Information
Taxon OID3300031715 Open in IMG/M
Scaffold IDGa0307476_10000025 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)162036
Total Scaffold Genes139 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)117 (84.17%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000838Metagenome / Metatranscriptome866Y
F004902Metagenome / Metatranscriptome419Y
F023188Metagenome / Metatranscriptome211Y
F029705Metagenome / Metatranscriptome187Y
F037898Metagenome / Metatranscriptome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0307476_10000025106F000838N/AMRRVAGRAIRITSRTVFFGCGLISLLTGVPYAMLRGVDLPVQSEWVIFVVALALVGLFSLTAALLPRSLMAKVCRKDRDDERLFSTPLKLLGGCAAISYLLALVAYFAPHSWNLNPQLMLALCPMYLVKMTFDPSPISIFLLLAPMNAAVYGSVGVALGYAGLAFRGRR
Ga0307476_10000025114F029705GGAGGMAETIGKIISIKVMSFLPGTVNAFDIANISLKETSTGTTWLFHLWQSRDDDAAVHRVVETQRLALAREAAVRKLTVHVFAEPDSGFVDGLQVDTP
Ga0307476_10000025133F037898AGGAGGMPRFYRWLLYLYPSLYRRAYGDEMISVFRDAQADVSDGSFGERICFRAREAWGLLAGAVQEHLSIISGRYQLISFTRFNMRPEFRFPRSTVFLMSIIFAGVILAMEKAHTIQVKYAAGVGSVWPSLPWFLGLALLFTCVTAMLVWGILFALGRTGAHRLAKIQPGTNMTN
Ga0307476_1000002521F004902AGGMKKPVIRVTKWLGDIPVEARCSACPDLEFKAKGVDHRPSREAYQKSLQQQFDAHCKATHTSANGDIQSLTTTD
Ga0307476_1000002591F023188GAGMSEPKPDNSASRAATYFVFIFLIAAIIETLIAGLGR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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