Basic Information | |
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Taxon OID | 3300031715 Open in IMG/M |
Scaffold ID | Ga0307476_10000022 Open in IMG/M |
Source Dataset Name | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 190982 |
Total Scaffold Genes | 134 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 83 (61.94%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Indiana | |||||||
Coordinates | Lat. (o) | 39.0844 | Long. (o) | -86.4705 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F001431 | Metagenome / Metatranscriptome | 696 | Y |
F005420 | Metagenome / Metatranscriptome | 401 | Y |
F011536 | Metagenome / Metatranscriptome | 290 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0307476_10000022113 | F005420 | GGA | MNAPALSSLVLALVAAAASAQSSSPTVYAESFRKGSTHITEEKFEAKLTPADATYRERIKDSAGNDRYELTIAPQGPLGDNKITSWRVTLRDLHHTIYNNLLVEDQEPSQDPKNNLWWLNPNRFGGVPIRAKRIIHVDGFYVLFEVRDLHFTPLDSPYLDSMAVQFELSNSDPRGAH |
Ga0307476_10000022127 | F011536 | GAGG | MSCGLIVSVWMLPTTGQTVAEVARPETERAILSSQEFHCHTGYSLAQCQKDILELKKVLAHYPIEGLGHWTWVLVRSQDWKPISHMLRLNPESPAFTALEPRETFLEEALFVHDPLRTAELMEEWQRSMPELLELAVTHELGHAFCDEPNEAVADHFGEELRNGRLTRCRTSTEPRRKRVGTAELRGLKTNAFRAP |
Ga0307476_1000002266 | F001431 | GAG | MWSIQDVSAEELAKLFHHYRTALAHDFDSPGGEGATFSWDHSPQQERKLMVAAARLALLELATAPAQSVTSRPYFAKPGEAEWGC |
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