Scaffold Ga0307476

Basic Information
Taxon OID	3300031715 Open in IMG/M
Scaffold ID	Ga0307476_10000016 Open in IMG/M
Source Dataset Name	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	197781
Total Scaffold Genes	184 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	103 (55.98%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

197781

Total Scaffold Genes

184 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

103 (55.98%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location Name	USA: Indiana
Coordinates	Lat. (^o)	39.0844	Long. (^o)	-86.4705	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Indiana

Coordinates

Lat. (^o)

39.0844

Long. (^o)

-86.4705

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000138	Metagenome / Metatranscriptome	1954	Y
F000870	Metagenome / Metatranscriptome	851	Y
F005581	Metagenome / Metatranscriptome	396	Y
F008506	Metagenome / Metatranscriptome	332	Y
F036390	Metagenome / Metatranscriptome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307476_1000001617	F000870	AGG	MDDRNADRQGLEKKTARELLWTVDRSFQGWTCSRCEWNYPIPTLLSDPEAKTAYDRLAAAKFRDHSCADHRSRLISPATDSFTARIRSMVAHGFKPKDAVELFLQEIAIEYPNEPKILAQAKAEGEDFLRRLRAGLI
Ga0307476_1000001620	F008506	GGTGG	MLNHETLKSVAEQLMSGSEVVLEGRASRLTRTGSRRFRTVRFVMGGVEYQAIEQNPEKPSHWGKLAREGHRVVQFRNLASQKYVAAAVDGKVTEYGR
Ga0307476_1000001625	F005581	N/A	MSDPRARIFGEKYRVLAVESQSLTIRGVRSGEVLTIINPNPDAPLSPAEYPLGKLIALSDPSSNSPVN
Ga0307476_1000001640	F036390	GAGG	MPPIEILTVEEATESAAPTTAPGTESGSKPRRFYALTLKDHFRLLVPFLVAGIVGVVARLKYPYWWPANELVYFLADAFIVAMVLGVAFDVFSAKLLVERVSDGLAQRLVGRGLPTEMQAPIRDVVSTDLVRDRYVKSYAFSSPEDGRVQVNVEVRYEVRNYSEAVRDYAPEMVAETFFHPEFRFLEYGIAGRKIYTFSDDTLSSKAEASDELGVTRVPRTALPPVILRPVRTGEKAACRVTWRYGLTVPEQYCDVTDLDQATLGATLQVENLPEELEFVSGGDASVHHEAGSQSWYFEKAFIAGQHVRAWWFRRKPAMRGARPGSR
Ga0307476_1000001692	F000138	N/A	MQLANQLRIPFTTLISYIPVIATVVTTLFSVILARATLRYVEATDKGLALAREEFEREWSPDLHIKMERVSSTEARVIVTNLAKTSVLLQLLQLRKLSHAMPFERCRLNDPLVGGMTWTQEMGRRILACTGQEFEGPIAASATFYAAGRMYRTDWFRSQIQVRDGRIVALEPSTMPTRRVRAVERKGPERRREFVQDVTAEVAPEKVDPKPDEKFFVTGA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307476_10000016

Overview

Ecosystem & Geography

Associated Families

Sequences