Scaffold Ga0307476_10000011

Overview

Basic Information

• Taxon OID: 3300031715
• Scaffold ID: Ga0307476_10000011
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 308008
• Total Scaffold Genes: 280
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 215 (76.79%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000348	Metagenome / Metatranscriptome	1250	Y
F005062	Metagenome / Metatranscriptome	413	Y
F012698	Metagenome / Metatranscriptome	278	Y
F052782	Metagenome / Metatranscriptome	142	Y
F060287	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307476_10000011146	F052782	AGGA	MDFRLRMILWIPALAYAGFLLLGGKNLASLGQVVFAVFLGALLGFLLATMFTIRQLRRVKRFARLRNY
Ga0307476_10000011183	F005062	GGA	MEMPGKVGSMKQNVARAVASICFLIFCTAFSIDCQQSPPSAPAPTFRVQSSLVLVDVISLDLKSGLPVRGFTKEDFRVFDTRHEVRIVTFDAGADTRPIALWLVVICNEGGIAGASAEFVGKESVFRSALDHLEKHDRVGVAHWCDNGETQLDLLPTEDRDSPLRVLAESLKPIPFQGGTEASDEVGEVTFRKMIQLIIRDAYRRNPKPLPVIVFLHGDHTGQPRHELDQLVDDFLETSGIVFGIRDDRSAVLHFLIGEQAKIMHYMAKHTGGQYFSAPPSGYAAALEAVLMQLHFRYELGFVPPAIDGKRHELRVELTKKAKEQHKQVRLRYRPEYIPVPKEPEWAH
Ga0307476_10000011259	F012698	GAG	MTSHSYESPSIAEICASVTRLGYGAKQNIRLYGEEFEVISDPFPEAGGIAVSVKTKKGNGVRVIQLPATLLRSVKGRLSTAA
Ga0307476_10000011270	F060287	AGGAGG	MGDLMLMRQTPVSLLRDWLAKNTESLRIIPERDIILQARLAVPEISQMDNGDIAWEIHQWAKTHSFLPLDLPGASTYVSGSSGATPVRSGDPEIIERLKVLLNTLKSVPTEIKWTGKDAGAAISVSGVTATLGNLEATAGWDRTLELKTSVSGMEFSGQIDPVNKNWTMTFTIGDEVPNLSDVATVFQNGESALRGVVTNAGKVDLKNPSKTVQQFKPYVDPIKDAVDAASKIAKQRPGDISFGVSLKGPLPNSPNAGGITVAAVITILF
Ga0307476_100000118	F000348	GGA	LKKAFLILAAVVLAPVLVVGLAVLSAGDWRAIGQTEAGDKVSVSSVHVLKGNQRLALVRVEYKEPAQLPQGGPFVEMRARVHFNCTTGAVTPTTEWFYTRDRSGRSVVGKKASHDDKFGGGAEGAFADMVSRSVCSQTK