Scaffold Ga0307476_10000009

Overview

Basic Information

• Taxon OID: 3300031715
• Scaffold ID: Ga0307476_10000009
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 448888
• Total Scaffold Genes: 406
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 293 (72.17%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004421	Metagenome / Metatranscriptome	439	Y
F008299	Metagenome / Metatranscriptome	335	Y
F015941	Metagenome	251	Y
F059222	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307476_10000009287	F015941	GGAG	MKINSKSKTLLALALAIALAATGCSAQWINTALQDLPVLTQMALNIATLVSTLAAGQQASVADTAVIQNISAQASRDLNLLQTLYNEYKTSPSPTTLQKLQSAISDLNQNLPTMLQSAHISNATLSARIAAAVNLILTTVNSFAALMPQASPVTTRKTSPSALLHAKNLKKQWNQQVCAPTGNPVLDAAFAASVLR
Ga0307476_10000009387	F008299	AGAAG	VVQGELMSAQKVLRFPMRNPDLFSPEINSQLLTASEFSRILEAAIRALPHIQDFHVREELKDALCDLFRVEETA
Ga0307476_10000009402	F059222	AGGAG	VGLGTEIVFLLVLGLLVLGPKRLPTILGHVARAKAQFEGATRSFKSQLQSELEGQHTNVEADLSREAGRQ
Ga0307476_1000000952	F004421	AGGAGG	MSGKQMMRMEEVQLGGHETQGTVLMTVGKLLLWTDLIFMAFVYSGIKGGSYLYVYWTLLQGTIGLTLLIVGAVKRGPLTE