Scaffold Ga0307476_10000008

Overview

Basic Information

• Taxon OID: 3300031715
• Scaffold ID: Ga0307476_10000008
• Source Dataset Name: Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 450735
• Total Scaffold Genes: 396
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 311 (78.54%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location

• Location Name: USA: Indiana
• Coordinates
  • Lat. (^o): 39.0844
  • Long. (^o): -86.4705

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001269	Metagenome / Metatranscriptome	734	Y
F001352	Metagenome / Metatranscriptome	717	Y
F015366	Metagenome / Metatranscriptome	255	Y
F030181	Metagenome / Metatranscriptome	186	Y
F036800	Metagenome / Metatranscriptome	169	Y
F047788	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307476_10000008150	F030181	AGGAGG	VIQHRNLFTAGGALALSFGLMLRLWTHGNFSHFCSGFFVGMSIALLILGLARQTRGILR
Ga0307476_10000008225	F001352	GAGG	MSSREFSPEWVLSSFIPPIAAPQHEISELIIVARRLWPSIQAHGYREQPGKNSDEALAFASEVWEGVLRSVAKTIRRHDGRNWQVKNMEAYLFGVFHHRFNRALKKERRRLQTIQHLPSSRDLEFLRQAHDLRAVRDLEQSIQLKEAVRNMDEWTRKVWAARQYGYSWKEIATQLGLTEPQVKLRFRYAIGKIRARLGGAT
Ga0307476_10000008226	F047788	N/A	MDLLGRGLSRDFPNPQRVGCPDLAMLKGIALHKVPLAETDRWLDHFSSCSPCFQEFTQFRKRAVERRRTQVWLAAAAVLFIAVAGWLWVRTRPSVQTSATVVLDLRERSLTRGENPTGAKEVALEIPRTARHLIMDLPIGSKEGSYDLALLNEAGDEVSRATGTATLEDHVVILRADINIRNLSPGLYFVGLRQLGPEWSRYPTRVI
Ga0307476_10000008387	F036800	AGGAGG	MSAVADSTLSVGKPLRASSDQVWIPLLGGLWVIFNVGLAALGIYMQRPGTCSFVAGLVNGTLLSVVAVALASERFQAGATGLLGGLSLSGLRSDGSMIWKAMESVHNLVDHGLRNMGIEVNEKFHHAIEQEALYMIWTMVLVVMASLIAEWVRSSRAQG
Ga0307476_10000008393	F015366	N/A	MTPEKTRRVATAVGFLSGVLACLDALRDARILWPPDAVWEALRNPQRVELGGGIALMVVTLALTIGRNWFAGPS
Ga0307476_10000008395	F001269	N/A	LKENQPDLLREAERLTQESPTGVQEEPDREIRYWHLREVDWPVADRQIRVVKTVRIEQQCRVTVRGKDAARMKGKTAILLPSTNFYATNFELGSISPLFIHQLSRSRWRIDTEVFQTITTDCYLKHPAVHQTTALVVLTMIRFLAYTLSLVFYHRQVRSHARRKCDTFHALAKRFAYWFLVVSPNTS