NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307476_10000001

Scaffold Ga0307476_10000001


Overview

Basic Information
Taxon OID3300031715 Open in IMG/M
Scaffold IDGa0307476_10000001 Open in IMG/M
Source Dataset NameHardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1135410
Total Scaffold Genes1085 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)763 (70.32%)
Novel Protein Genes16 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)15 (93.75%)
Associated Families16

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil → Hardwood Forest Soil Microbial Communities From Various Locations In The United States

Source Dataset Sampling Location
Location NameUSA: Indiana
CoordinatesLat. (o)39.0844Long. (o)-86.4705Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000036Metagenome / Metatranscriptome4352Y
F000072Metagenome / Metatranscriptome2651Y
F001546Metagenome / Metatranscriptome673Y
F002522Metagenome / Metatranscriptome552Y
F005333Metagenome / Metatranscriptome404Y
F005722Metagenome / Metatranscriptome392Y
F007776Metagenome / Metatranscriptome345Y
F009007Metagenome / Metatranscriptome324Y
F009085Metagenome / Metatranscriptome323Y
F014764Metagenome260Y
F032063Metagenome181Y
F037751Metagenome / Metatranscriptome167Y
F073947Metagenome / Metatranscriptome120Y
F077420Metagenome / Metatranscriptome117Y
F085844Metagenome111N
F105815Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0307476_100000011020F014764N/AMINRTQDSSDETTRMREPTKHPLVVRVTDNDFQCEVLSKLAGLEAKMEMLVGGGQPGRMSLVEDRVNTLERNDVRRGVYDRLVNAALTTAISVLIALHDRWWK
Ga0307476_10000001122F007776AGGAGGMRNLFLCLVLACMASVWVMADDSADMKGKSDTRTITGCLSQGDNAKEFNLAANDGSTWEVRSSNVALAKHVGHTVEVTGVVRNAMAHNMKEDTKDMAHDTGATKENNEHGHLKVTHLKHVSDSCSK
Ga0307476_10000001139F009007AGGMTIEVDHSVDNDTCRKLINLGYARSKRVRLYGQELQIVSDPFPHNEGGIAIEVAGSSESGTRTMRLPLSVVQVARKRPKKRVA
Ga0307476_10000001252F000036AGCAGMGYKETFWMACDSTEQLRAEYGPFHTRSEAEHEACKLGFGYLLRYEHVIGDKDDIQEVRCIFIELQPEQARPRYVAEKLHTRCATCGACAVHDYGWQAEVWADIHEFEHSRHCIRLFEQTRAEGLKEVPGWRDACA
Ga0307476_10000001308F002522AGGMKFSKLQIAIAAGAGCLIIFGFFGYLMWLNSQPPVLEKSADLDPLTKIPLSISLNPLRDRSSERAASEFLRAMRDGHCKAQLTDWEKDYRKRYAAFICDSEAKHPLISWKVADWDDRPPLRILEYKAKRQGDGASYEELLSVTLDSRSGDWVVTKYDSLY
Ga0307476_10000001338F085844AGGAGGMAQFQLNKQATVMTRLTELLRIKVIVKLQELGEVSGVIEQIVAPAIADDLQRSIEMTQFKVRLESGETVTVPGSAFSKIEYAITQN
Ga0307476_10000001529F032063GGAGMRACVHFVVVGCVIFSGCGNRPGADIGFINETQHSDAQLWSLWKAAQTNLSQQIDLNPLQRQFSSVAPDMLPGDSRVLGVSPRQLVVSSQPDVTSAALYAATGTNRPDPTGLIVCPQPCNVSYAAAYSLYLRPASHYAASWEFAGSNFDALVQYEFENQILKTLGYDMRWR
Ga0307476_10000001588F005722GAGVKPFRSTRDLLADVEQLLAENRPSFHDSPLEKVAGLLAEGRHYGWVGIYLTLEKQLAMPLLPNAHPAQFEASGTRKKVIVTMKIAGREIGFLNVESNRENAFGADERVLLERVAGLLARFLTGPGKYLVRKAGEPEQKPQAAAA
Ga0307476_10000001620F073947AGGAGMESKSPHRGITMHRLPVGGDFPGLVFAVGSALIFLIALPALWYLVVGALAVGLVIAAVLQVIHDKPDESQRTTLKL
Ga0307476_10000001772F000072GGAGLNVERTIADIEELEEIFSLSDIRPLTASDVAAANRRHDERLSRSPWFRLWQQYGICCRTEPPVLRLPE
Ga0307476_10000001787F105815AGGVIARYKKLFRSNPELGLLALFGLLHLTLLLATDIVQQVKLMLHVLLAR
Ga0307476_10000001813F005333AGGMSKLKLLYGELNEEVLASQAAELQKAGYTVQTALGRKAVQDLLKKETFDLVVLGQTLTRDDRHHLPYMAKKAQAAAKVLVLHTDGSRHPYVDGNIDTGEDMQHFLDKVSAMLQQSKPQPKAQQSKTMAAMSGR
Ga0307476_10000001893F077420AGCAGMQDLMNKYAIPANTPYDQVASQNAPGYDNRGYDNRDYDNRVYDNRGYANQLPGDDQNKFNKEYTKWQEANAKNDCDDIDKHARNMEQIMQRDGIPPNAPFASIATTNGYGQHYDVRQYQGRFTPDDQKKFDKAYEKWRSDREKHDRDDYAKDEGKLQEIMAKYNIPRDVPYDVLVSGNRG
Ga0307476_10000001898F001546AGGMVEAIRWDEKAGLRRDAVGSQVIDALEAQKIKETGNEEG
Ga0307476_10000001930F009085GGAGMNHLLLLVFVQLSLTFGVAGLLWPERLVTVFDVLMFPWPATHKFARTNAWAAILLSLVMFLALWAGLHAA
Ga0307476_10000001987F037751GGAGMRVHSLFVCVVFLALASSAQDWQGCKPKGDYSFNDVKAAVRRVTSSGMYSGWDEKTFNRSGDLVAVAVLKSIDDSEMASPKNAKWVLRVIRDAFECPQYCVKVTDDRRPRITLLLLEHLNEITRGKMQSDIKEVKQFILERAGKAH
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