Scaffold Ga0318496

Basic Information
Taxon OID	3300031713 Open in IMG/M
Scaffold ID	Ga0318496_10083705 Open in IMG/M
Source Dataset Name	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031713 Open in IMG/M

Scaffold ID

Ga0318496_10083705 Open in IMG/M

Source Dataset Name

Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	1695
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

1695

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location Name	Puerto Rico: Rio Grande
Coordinates	Lat. (^o)	18.321	Long. (^o)	-65.8172	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Puerto Rico: Rio Grande

Coordinates

Lat. (^o)

18.321

Long. (^o)

-65.8172

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001698	Metagenome / Metatranscriptome	650	Y
F002850	Metagenome / Metatranscriptome	526	Y
F006575	Metagenome / Metatranscriptome	370	Y
F057529	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0318496_100837051	F002850	GGA	VTGIHADIDALKGLHGALVKYRHAQRDVTARGEDQLRVTRASLEAKASRGQTQLELSQAELGACRDRAARAAADDTADGTVDCSGYARAVEQCGERLEAIRRWQQRIDAEAGEFQGIAGRFAYLLEN
Ga0318496_100837052	F001698	AGGAG	MAGVINDIEALAEFRAHLMRFNHELAENFATMQAHWRELGEVWRDDMYRLFGEALDEVTPGIATYLSATEGHEAHLAALIERLSGYLETGAGAGLGVGRPPEARRGQGNGTGRR
Ga0318496_100837053	F006575	GGAG	MTTESATATSPYLSLRQAVRPAILAHRLLAGDQERAGKLATECEDLLYLSGELLKAAGRARILAAESPPTMPEEGGGDRQAQLLEAYTDAGLLWAKVVGSSLALAGALIERGEWEDVRALASFLASAGEQSAAAELRIQLGREVWETHREQLHAVSNDMPPAAIEQAINALRAVLREVPEEYPDRNREVNRFLPPLASAVHAIMKEQEADIPYHSRVEHIATGGVAKYPDIVKTSLDELAAEFEGICRPPGGT
Ga0318496_100837054	F057529	N/A	VLSPAESDALLGISAAASLDDDRALYRDTEWPAEQVEKFKPYSTASLYAFVREGFHTTSGKWSPA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0318496_10083705

Overview

Ecosystem & Geography

Associated Families

Sequences