NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318496_10072873

Scaffold Ga0318496_10072873


Overview

Basic Information
Taxon OID3300031713 Open in IMG/M
Scaffold IDGa0318496_10072873 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1811
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049525Metagenome / Metatranscriptome146N
F052747Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0318496_100728731F049525AGGGGGMWGLQPALRRGAVMITLVACVGIAAAQKGYRGAGGTDASAMDETTGSVSSPGAKRAGAELALSDEQRGRIYDSVM
Ga0318496_100728733F052747N/AVLINGALAVPDAPATDMVPAKFSAKNAADDALITIAYTFKTLTDDERRAIFEALKGQPAAAFNADVGTELAPAIELRPVPNEVTARVPQTKGYRFAVANNRVLLVGTSRIVVGVFGDANAPASEGRRGP

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