Scaffold Ga0265342_10522254

Overview

Basic Information

• Taxon OID: 3300031712
• Scaffold ID: Ga0265342_10522254
• Source Dataset Name: Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 604
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location

• Location Name: USA: Seattle, Washington
• Coordinates
  • Lat. (^o): 47.6516
  • Long. (^o): -122.3045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003000	Metagenome / Metatranscriptome	514	Y
F069590	Metagenome / Metatranscriptome	123	Y
F083628	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265342_105222541	F069590	N/A	QLDRAMLEQLGGAQELALPVAGTEVEADDLHPGETTQGVVSIRQDLKSPAVVQLVFRDGVKATVVL
Ga0265342_105222542	F003000	N/A	MKADTQLDEMHDRLIDFHMQDPKERFCDVLLRLVEDPLKPRDERGRLRVNPILLLLAIVFALVFGTFLFFSMVQL
Ga0265342_105222543	F083628	N/A	MTAENEYRLGRRAFHQNQEESVAAAIAIVAVLLLAAGFYVLASRFHVRSVQLVEGPLY