Scaffold Ga0265342_10248123

Overview

Basic Information

• Taxon OID: 3300031712
• Scaffold ID: Ga0265342_10248123
• Source Dataset Name: Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 951
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location

• Location Name: USA: Seattle, Washington
• Coordinates
  • Lat. (^o): 47.6516
  • Long. (^o): -122.3045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010804	Metagenome / Metatranscriptome	299	Y
F053933	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265342_102481231	F053933	N/A	VELSEGLAGSMKTNGNLLTVDYTSATGKDVEWKVFF
Ga0265342_102481232	F010804	AGGAGG	MRSTIGICMFLALCVPLGAADTPIRVETQNLVVAVDPAACRWSAQVKGSPMRLNDVHFLPGDDPSGWSVTSSVNNNDTTNFGSFVTVTLRGKKPGQLDFEYQVSAGKNNNDILVSLGRSNTPGKAADIGDMDYFLSNDARLGGTTEKWISLGARSLNEEYYDLSWIADLVTPTMYQVNQVVRNMDTGNSLLMGHVTTLKGASRFEVAQGWTGKSPDRMQVRGYCSYKVTMPPGQSFPGEKLLIEFSTDAIRAMEHQADLIAIAHDIRL