NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265342_10234091

Scaffold Ga0265342_10234091


Overview

Basic Information
Taxon OID3300031712 Open in IMG/M
Scaffold IDGa0265342_10234091 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)985
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location
Location NameUSA: Seattle, Washington
CoordinatesLat. (o)47.6516Long. (o)-122.3045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013791Metagenome / Metatranscriptome268Y
F095767Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0265342_102340911F095767GAGMRSRCCTIDSSCIIALDHLQLVPQLSMLFSPVLVPKAVRKELFKRRATKDRLQIIFSTYGFFQRCDGYDQGAVDFLLAERTRLGVKDRGEVEAVVQASQAGAAVIVDDRWGRDLAMRFDLDFHGTVWVLQQLNQIRLLSSTLGECFAVLRDRGVRMPWQ
Ga0265342_102340912F013791N/ANSGYNWGSRFIMQVFISYGDVEDQVTALRLQALGAVNGLTVYVPPAHTRRGMPTLLDPEASQKLHRAEVVLGVVGAGLTEACRQELNAGLSLHKNMIVMVHPEFAHLQSHFGSNLVVVDPANPDQAEYGIVQYLKSLDAQQTAKTALLAMGTLALGLLLLAPADRS

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