Scaffold Ga0265314_10000027

Overview

Basic Information

• Taxon OID: 3300031711
• Scaffold ID: Ga0265314_10000027
• Source Dataset Name: Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 278331
• Total Scaffold Genes: 234
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 191 (81.62%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location

• Location Name: USA: Seattle, Washington
• Coordinates
  • Lat. (^o): 47.6516
  • Long. (^o): -122.3045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012660	Metagenome	278	Y
F032257	Metagenome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265314_1000002749	F032257	AGGAG	MNDIDPFLELPITAQLAAIGFVLCATCLFVMIIAAPRRNCFFFRWRPETRFLALLFSPTLLIIWPIVLYGWLLKSSGIDPDDLDFDDD
Ga0265314_1000002752	F012660	AGGA	MHRAVFNLIAAVERSEHGYQDLPPGSINDEIESELATYGYAVALSDRLWIGGYRVHSPESIQFGNYRPYVPPSIFTCMSSQSAHVPDARDFNLEAVLEVRGEIRSN