Scaffold Ga0307385_10302872

Overview

Basic Information

• Taxon OID: 3300031709
• Scaffold ID: Ga0307385_10302872
• Source Dataset Name: Metatranscriptome of marine eukaryotic phytoplankton communities from South Atlantic Ocean ? PS103-2.R2 (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 608
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Isochrysidales → Noelaerhabdaceae → Emiliania → Emiliania huxleyi (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): -49.0129
  • Long. (^o): 2.8377
  • Depth (m): 50

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055371	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307385_103028721	F055371	N/A	SPSPSCYHMFTTIMSCVFVASASAFTAPSCAGSRPLALARHPEVVAQFFGKKSNAADAVPKGWRKVPSRSRPGEFSFENIKTKERFDKLPMGSFFDDERDTVSKPMWKPPTVGDDDMTDAERSGFTQDGRDLAAAGSEIYYALVPFLLLAFAYSNGIFSFGYENGNF