Scaffold Ga0307385_10000687

Overview

Basic Information

• Taxon OID: 3300031709
• Scaffold ID: Ga0307385_10000687
• Source Dataset Name: Metatranscriptome of marine eukaryotic phytoplankton communities from South Atlantic Ocean ? PS103-2.R2 (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5160
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Atlantic Ocean
• Coordinates
  • Lat. (^o): -49.0129
  • Long. (^o): 2.8377
  • Depth (m): 50

Associated Families

Family	Category	Number of Sequences	3D Structure?
F085090	Metatranscriptome	111	N
F094857	Metatranscriptome	105	N
F104391	Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307385_100006873	F085090	AGGAG	VCQDLLGWLARLDQSVSLDPLVYRAALERLDHRDSLEPRATAVSLAFRVFLDPLDPKDRRDLQAKTERTESQVQWAGVVLQDLTDLWVVWATLVLLDQEDHQARKAREVHPASLVLLGLLALRVRAMEWTWLP
Ga0307385_100006874	F094857	AGG	VEKLDQEECLEIWDHLVGLENLECLVKLADRALLDPLGCPVKRVQMDQEDPQAKEDHRDLKACQAWKAEREPLVLTDQMDRPDHLDPVDLLGIEEFLVYQALLAQQDPQANKDHKEKGEILASLESKALRDLLDLLVLLGLLVSEASGVRRVHQESRELQGWAVDLVTRVHRVQQE
Ga0307385_100006876	F104391	N/A	MKENEDQQASLEKGECPVSLDPLDQEVKMVRKDQMVNLDHLDPRDHPDTKDPLGWLVCLVSEEFLGLKVLRVEEVIRAFLDQLVLMAEQARGVNKELLVLQDPLGRLEVLEIQGRQGLSENRGQLV