Scaffold Ga0310686_119832408

Overview

Basic Information

• Taxon OID: 3300031708
• Scaffold ID: Ga0310686_119832408
• Source Dataset Name: FICUS49499 Metagenome Czech Republic combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33053
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (83.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Czech Republic: South Bohemian Region
• Coordinates
  • Lat. (^o): 49.043
  • Long. (^o): 13.6183

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000272	Metagenome / Metatranscriptome	1408	Y
F002015	Metagenome / Metatranscriptome	604	Y
F017681	Metagenome / Metatranscriptome	239	Y
F034646	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310686_11983240811	F002015	N/A	MKNASVVSELLEPYDARLMRCYPISDRINHVANDDAEYSAPVELEIQNDLFS
Ga0310686_11983240827	F017681	GGA	MSNIEHFPSGTTLHHAVMKAKELMPKQILSVPCTTCGAAIGKVCELHTGAPRSEPHRDRKLAAAEAMETKTGKR
Ga0310686_11983240835	F000272	GGAGG	MSQTVAERTAEHIAESAHQASRATSAIADVIEEGVGVVRRAAKQGGDAAEEFLNETTKRLQRHLLLTFATTFATGLAAGTLIGWIIKRRQIRQNW
Ga0310686_11983240840	F034646	GGA	MDSEATRTARIAVLQEEIEFIHFANELYWRQANPRDAAQAEYYRRQDRLEEIRSELAELQKA