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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300031708 Open in IMG/M |
| Scaffold ID | Ga0310686_116907175 Open in IMG/M |
| Source Dataset Name | FICUS49499 Metagenome Czech Republic combined assembly |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 105056 |
| Total Scaffold Genes | 85 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 56 (65.88%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Czech Republic: South Bohemian Region | |||||||
| Coordinates | Lat. (o) | 49.043 | Long. (o) | 13.6183 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000525 | Metagenome / Metatranscriptome | 1049 | Y |
| F008957 | Metagenome / Metatranscriptome | 325 | Y |
| F032300 | Metagenome / Metatranscriptome | 180 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0310686_11690717520 | F008957 | GGAG | MTDLVVREKVVRGKIQQEKSGKLKKSNWWWPGVVATSLAGAAVVAFRGCWHGKMGWPVSVQGYSYQVCLSCGAMRLFDEDTFSAHGPFRYDLNELIAWQKSTKPNARAMADVPRPAL |
| Ga0310686_11690717525 | F000525 | N/A | MVKTLLLAGLFCLSLSCSPRDFLTRRLAADLISASDVFKTPQLFWLRTGIVSNKDFSSPDSMVLQRRGWIIGNEQKCPAGVDPPPCWDVLLSPLGVDTIRPLISSALPDNGPIGIQVARRELVGISGISKAGNFADVEFTWRWVSINQVGAALYDSGVHYQSTVGFRGYDDGWRVVDQNVPNNQPLDEALRKAQPTTQ |
| Ga0310686_11690717551 | F032300 | N/A | MRVLLLHPDDDFHGSWTGQHWDSVIDLGRAPRSFYDKCSATLGCPVFSIFDLAVEVEDTQVWRRLLALGMGLVVDRFGIDWWDVIGLILQQELQDVRLALRMAEKLSGCRTLATSRPSMTAEVLRLQLGIPLQVLDWGLQKRLVRSVLRRGRAARNLTFEQLLQVVYDKYDPHYRWRRKLAGSATLISERKSKSAKSEPVVLLPSAYLNVTKTALSYAGILPEQAFLMVLARESAAVSSMPANVQTERLAAFATTKLDRNELQHLEICWRRMEQSLGERAAFKLPVRLGILKKGLLWLRWGVTVRDAWTQVFDTRAVAACISADDSNAYTRIPLLLAGQRGLPAIACHHGALDCRMAFKKPRFSNYLAKGEMERDYLERVCGIDAGSIRVGAVAPPENASVWSERAPWITFFAEPYEADLWRVEAIYREVLPRLCTAARRAGKSVVVKLHPFESVRHRKRLLARTLSESDRKLVSMTDAPFSREILQSTWCAVTVESTTAFECASVRIPVFLCGWLRHAYAGYAPQYVRFGIARMLEFPDDLLRIPDMLSDSRLGSDNSPTPLRAISPETLAEVLGQPQPSGLR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |