NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310686_116337670

Scaffold Ga0310686_116337670


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_116337670 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1334
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002396Metagenome / Metatranscriptome564Y
F003157Metagenome / Metatranscriptome504Y
F004392Metagenome / Metatranscriptome440N
F099394Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0310686_1163376701F099394N/AAPRTSATIKTTTIWFFSDIGFSFLTASEVLLRPTEQQSPRKSGCFQETEVSSN
Ga0310686_1163376702F004392AGGAMPVNGPETIADSKTSQPVASEGRSVRTATEAKPAAGRGAATRRRRDRQEISKTNGEERFFLASANRNGDVPALGRECSTEAEAIIEAFREKVNLYKVTEFQTRADIGPSGEPILRKETLQKTNPAS
Ga0310686_1163376703F002396GAGGMRSLFPSTYDRADVLMSAGCSTFVSAALILVIPRVGIILLEILLGLFFIGCALAARARLRIQARSQAKEGPEGSTSAKAKWFDRYDVLMILTVIVIDASLSGLLRHAGLSEGTVGILPLVLFAAGILLKPRTVRFIESRRKDRTD
Ga0310686_1163376704F003157N/AFDPDANQKRENTDLLGFARFGGLDRLDWLMILISVLLGTIAKQHHFLDLPDWFLEWVSPFLLMVFGYKARRKITELVQSRRDRGKNTSKN
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