Scaffold Ga0310686_116313516

Overview

Basic Information

• Taxon OID: 3300031708
• Scaffold ID: Ga0310686_116313516
• Source Dataset Name: FICUS49499 Metagenome Czech Republic combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7803
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Czech Republic: South Bohemian Region
• Coordinates
  • Lat. (^o): 49.043
  • Long. (^o): 13.6183

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000528	Metagenome / Metatranscriptome	1047	Y
F007165	Metagenome / Metatranscriptome	356	Y
F050281	Metagenome	145	Y
F091706	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310686_1163135162	F007165	AGGAG	VDLMAPPDGRKFQVQCDAGSQGRFEVGTDTLSVRVGQRMRAGKEQEMWDSVNILCKEQPDGSLTVEVLVSHPDWEEAKTIGAIHSRPQDSGTGIPSLKCDLQPSGPGGLHRASGAQ
Ga0310686_1163135167	F091706	AGGA	MTKADEYSELFLWNGNADRWIRVLQRMELIRILSKRDMKVYEVQLEEVRAALNAHVSGALATRERDDHSRLKRHRTAWEKTNTKPNRK
Ga0310686_1163135168	F000528	N/A	MGEWKAQISVRVRQALRSELEEFAAREKRKLGNLGEVILEWAFEQLKVAGSTERLLKYKIRLPETALQGRKLRK
Ga0310686_1163135169	F050281	GGA	MIYQREFPSQKNEKTARAKDALVRLRSNPRDSVAVMTVYESCSRELQEVAVRHFAKNQLGKKAVLNLLVAVVSCVWSYDPRSMNASEWVSRVADAEARSLREALDVNGNRGRSTRRAM