Scaffold Ga0310686_116134739

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0310686_116134739

Scaffold Ga0310686_116134739

Overview

Basic Information
Taxon OID	3300031708 Open in IMG/M
Scaffold ID	Ga0310686_116134739 Open in IMG/M
Source Dataset Name	FICUS49499 Metagenome Czech Republic combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1225
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location Name	Czech Republic: South Bohemian Region
Coordinates	Lat. (^o)	49.043	Long. (^o)	13.6183	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040963	Metagenome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310686_1161347393	F040963	GAG	MLFFGYFSCLIVAFTAVAMWLIGSFNYSRVEKHYHPRPPIEQTVTAEEIAPLHLQVTKKEASTAKDDVSPVKHHKRKLLARQRNNNYGYGNAQGYAEASQNGPRRLFFNW

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