Scaffold Ga0310686_116089199

Overview

Basic Information

• Taxon OID: 3300031708
• Scaffold ID: Ga0310686_116089199
• Source Dataset Name: FICUS49499 Metagenome Czech Republic combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28097
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Czech Republic: South Bohemian Region
• Coordinates
  • Lat. (^o): 49.043
  • Long. (^o): 13.6183

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004030	Metagenome / Metatranscriptome	456	Y
F034634	Metagenome / Metatranscriptome	174	Y
F036798	Metagenome / Metatranscriptome	169	Y
F069103	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310686_11608919913	F034634	GGAG	MSAFTHLVDGLFGLAAVSSFAGFVFHLLTGNPDLALMCFVGIGGSAAMVWMFTSCRRA
Ga0310686_11608919916	F004030	GGAGG	VLRCAVEERQAREEFDTALARIRHEIKGRLILHGFFGRVSYTDIEAADHILSGSTVEIAVKGRTVERSFSRQEIEACCLRVGGAVLSGVISMVDELSPHD
Ga0310686_11608919920	F069103	GGA	MALKPRVFDDLLHFASTSRSRSTVTLAAISFAVCHLIVMGTGSAGFSGSADLGVDIPRQLIHFVAELCRFALPLGVMLVGLIRS
Ga0310686_11608919929	F036798	GGAG	MSTRSNDPFTAALLIGVALVTAGALLLRQSVDLAHSIDLARSWPLFVIVLAFAQMVATIKERHQQGWGLLLAGNWLLANTMTNWAYIQISVPVLLGGLGLTTIIRGLRDYSGHLDENHRATR