Scaffold Ga0310686_113658910

Overview

Basic Information

• Taxon OID: 3300031708
• Scaffold ID: Ga0310686_113658910
• Source Dataset Name: FICUS49499 Metagenome Czech Republic combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5051
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Czech Republic: South Bohemian Region
• Coordinates
  • Lat. (^o): 49.043
  • Long. (^o): 13.6183

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000092	Metagenome / Metatranscriptome	2385	Y
F004042	Metagenome / Metatranscriptome	456	Y
F040290	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310686_1136589103	F000092	GAG	VKQHLGRQSGVQSVEVSLIDGKVDVTPKEDGQIDPAQLLKATYDSGVTAAEMDMTASGKIVKDSSGNLALQVAPNRSFPLVGNDLSKGLESLADTQTTVTVRGQLYKKGAGKKKPDTSVPLKLLILEVQKKE
Ga0310686_1136589104	F004042	AGGGGG	MNSKRIALLLLLCCPLAPVSQAQIKHIEMRVEGMT
Ga0310686_1136589106	F040290	N/A	VSREKPILLALLVVALAAYAFDCGAATNPEQAMQCCNSMPCSSGGHHGQDCCKTMPAMHAPFVQPSSAHGVFYSAHVFAVLSALGGSHSLPSPDRVIATHCHAPPIISVPASLPLRI