Scaffold Ga0310686_113592708

Overview

Basic Information

• Taxon OID: 3300031708
• Scaffold ID: Ga0310686_113592708
• Source Dataset Name: FICUS49499 Metagenome Czech Republic combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 48053
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 56 (91.80%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Czech Republic: South Bohemian Region
• Coordinates
  • Lat. (^o): 49.043
  • Long. (^o): 13.6183

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011867	Metagenome / Metatranscriptome	286	Y
F028227	Metagenome / Metatranscriptome	192	Y
F092536	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310686_11359270811	F011867	GAGG	MQLPALKNTVPASLIDGMSIENFIKNSTTNLQRIPTGGGGGTGIAGAIYLGFDGNTGKWKLNRETVEADDVGRILVPQHTMFEGYIEWAANMPLQKVQRPLLGVEHAEPMSERMLPRPLSPGAYKKDTDGPNYMLGFAGLMLDDGGTIVFEHSSQGAKKGINALATNATQAITAFGEIVHPVIELSSSSYENRNSGRTTHDPKFNVIGYVTDKRAREVTVIADSDIITRPTATKAKLRRGGSEAPAI
Ga0310686_11359270828	F092536	AGGA	MNQPRKAGRPRIEDRADTNEAEKPWLKLGMSRSTWYRRQAEQRKGRE
Ga0310686_11359270838	F028227	GGAGG	MTKAAASLAVVALFGLGVVGQPSAVKAQPYGYPERVDWKVGPGSFGFSGYPWPGPPFAWPDLKPTYGCYFTRARLKNAWREVEVCS