Scaffold Ga0310686_112679970

Overview

Basic Information

• Taxon OID: 3300031708
• Scaffold ID: Ga0310686_112679970
• Source Dataset Name: FICUS49499 Metagenome Czech Republic combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8448
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Czech Republic: South Bohemian Region
• Coordinates
  • Lat. (^o): 49.043
  • Long. (^o): 13.6183

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017403	Metagenome / Metatranscriptome	241	Y
F028019	Metagenome / Metatranscriptome	193	Y
F029255	Metagenome / Metatranscriptome	189	Y
F035901	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310686_11267997014	F017403	N/A	VLPMKFLSAAFAALVLSVTSVFAAYWQSEDFACSISLPDSGSAPSQSNWSTVGSTEDGTLVGAQRIDMTAFVFLGYVDIAKRPRFHLNEKTIEELQQRFFSTGQGFRRDLKRISLHGLPGYRLTGDSVYHGGHYGLVVDMYEANGRIYEVAGMKQNDLQPLKDPDIKAAMSSFKLLPQ
Ga0310686_1126799703	F028019	AGGAG	MTCALVAESADVEVYSSWALILVKMTDPSVGADYWDIVQNKIRPAIAEPEFTPLDLSYLY
Ga0310686_1126799705	F035901	GAG	VKRPLLLLLVLITLACGSCAYHQASTPFGPNDHAFMAAQPYPREVVLAEKRFQNFIRRADAKQKLTLAETPYVAVRAYELEADEVPWLTWKMALGRIPMNDYDGADLLENSGSVPVEFLLVFDQRTRELAAPEGVLVVGHPTRGKIGLYGGVKAVYGGGGSW
Ga0310686_1126799706	F029255	N/A	MNRYLVLFSGFLGLLSACTVSDSSKADNRNYAIETCYPVSNEIRLAEQRARDYWQKNASMVGPEPRYLVVAASSMLAAELNAEFSIKLDHSQTSGAYFTQGISSSSKQGVEGYLIFDTKTGRAVSTQGYIIVDTPPRGQIVHVAEYTARYIGFGG