Scaffold Ga0310686_111780528

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0310686_111780528

Scaffold Ga0310686_111780528

Overview

Basic Information
Taxon OID	3300031708 Open in IMG/M
Scaffold ID	Ga0310686_111780528 Open in IMG/M
Source Dataset Name	FICUS49499 Metagenome Czech Republic combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	15322
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (55.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location Name	Czech Republic: South Bohemian Region
Coordinates	Lat. (^o)	49.043	Long. (^o)	13.6183	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022762	Metagenome / Metatranscriptome	213	Y
F054256	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310686_11178052813	F022762	AGG	MAKAKEFDFEKPAPDIDEEDEATLAAIDDGIRDAKAGRTVELEQVRKLLPKWITASSSPKER
Ga0310686_1117805287	F054256	N/A	MLGSVFLITSATVLGQTGSQAPVIAKSTDGSVACNLGSLPSDVRERLKADFGTWKVQAQESLSEHARKTWEGKKPQACPGIAVGLFQSAKTPSYAVLLVPVDHPDDGYRFLVFGPKAEQSVYETTVVEKSDDHGASNYFIRKASISRFFNEESKKKFQVQAADAILMVDSGETEYEADLYFWSNGRFQQQPVDE

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