Scaffold Ga0310686_111287044

Overview

Basic Information

• Taxon OID: 3300031708
• Scaffold ID: Ga0310686_111287044
• Source Dataset Name: FICUS49499 Metagenome Czech Republic combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6522
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Czech Republic: South Bohemian Region
• Coordinates
  • Lat. (^o): 49.043
  • Long. (^o): 13.6183

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006757	Metagenome / Metatranscriptome	365	Y
F044385	Metagenome	154	Y
F084562	Metagenome / Metatranscriptome	112	Y
F098478	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310686_1112870442	F084562	AGGAG	MKKQSTTDAKRAAANDKPENGKTEKAKKVSKPTEPDAKFTLGSIDTVKRGFLLEFVKFVKAKGTVDAAMLIAEFNGRQFDGRKVTTDRVHRYISYCRNHGIFKAVVTK
Ga0310686_1112870444	F006757	N/A	MRTLAVLPPIKDNARMALLNLTTFQEISTDQLIAMAQAMPGGTKVQIPDRPTAIVLILGTRPVDTD
Ga0310686_1112870445	F044385	AGGAG	MLIRNNDGEVAGEMNVSIAQDGTVIRTNTMYHNGHPVTQNISIRDSHGEVRTTNVIGGKILP
Ga0310686_1112870446	F098478	GGAGG	MAKAKNGKAVDVKKAAAGEKSEPNGNGKAEGSKAVKIQTLTPANTKLVRRGFVKMFVDFVVKRGSVTTDDLAAEFSGRQVEGKKITKQRVLRYANWCVNKGVLKAK