Scaffold Ga0310686

Basic Information
Taxon OID	3300031708 Open in IMG/M
Scaffold ID	Ga0310686_110740040 Open in IMG/M
Source Dataset Name	FICUS49499 Metagenome Czech Republic combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031708 Open in IMG/M

Scaffold ID

Ga0310686_110740040 Open in IMG/M

Source Dataset Name

FICUS49499 Metagenome Czech Republic combined assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	63320
Total Scaffold Genes	65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	51 (78.46%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

63320

Total Scaffold Genes

65 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

51 (78.46%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location Name	Czech Republic: South Bohemian Region
Coordinates	Lat. (^o)	49.043	Long. (^o)	13.6183	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Czech Republic: South Bohemian Region

Coordinates

Lat. (^o)

49.043

Long. (^o)

13.6183

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000192	Metagenome / Metatranscriptome	1666	Y
F000949	Metagenome / Metatranscriptome	823	Y
F003215	Metagenome / Metatranscriptome	500	Y
F005153	Metagenome / Metatranscriptome	410	Y
F008094	Metagenome / Metatranscriptome	339	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310686_11074004017	F003215	GAG	MRGTIKTLRAVQWTMLGSILLYVVAGEVLGSRPRGVDASLSYVFTTAGVAIVGVIFVVRRTLVLRSAEVLASRPDDSLTLNHWRSGYIATYALCEALGLFGLILRFMGCSLQQSLPFYIGGFVLLFFFGPHEPVAAEAPLPR
Ga0310686_1107400402	F005153	GGA	MQVFHIRYRNAQGALMRILNAISRRGLDLTSVHADAAGQDHAVTVLLDVTHKQSGQLCREWYSIVDVVDVRSSAASLEHAHPAWTPLPPGSASVSEQSARAALA
Ga0310686_11074004020	F000949	GGA	MTTKSDSPRSHGDTSYYVLAALAGMGTGVVDVIVNDLLFTALLVLAACMLLGLLRPRCPWRWVVAVVVFIPLTEFAAYAILAVKPTRGQVYGSFLTALPGMAGAYGGAVMRRVIDNLRQG
Ga0310686_11074004032	F008094	AGGAGG	MRATAWFFGWFAPFLFYVPALLAQTNPPPPDPHEVVTRDPRTLTKPTDRSAALDLLDRARHNYNLRDISFPYALKVSFETNGTTQMEGAWTMEEISDGGSQWRWTAQLQDLQILRIGTNGRVYGNHPSEPVPLRVQLVRSALHWPITRNAGASAIRAADVELNGIPMSCFLLSASIPPNPAPRSWVEREYCIDPVTGFLQMWSEAPGIYAIYDYGGGRAFHGHTLPRQVSIFEDGRLAVQARVESLEDVASLDPALFKFTPELADADESFSLASPNRFPMRVDPSDGPTSPFFQPVIVHAILDAQDGRVLDAEPLQTSDRDLSRAAMDMVNSTTFPPSGFQQEVFINVQFHLPAAKMDGPPIFHSSVRWIILDRRGRVPPIKRPPHPG
Ga0310686_11074004052	F000192	AGGAG	MAANQVILYFDNQEDAVLFTVAASSVMSAEEPIHSNNAAAKVVQEICKASRITTVGVLNL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310686_110740040

Overview

Ecosystem & Geography

Associated Families

Sequences