Scaffold Ga0310686_109697300

Overview

Basic Information

• Taxon OID: 3300031708
• Scaffold ID: Ga0310686_109697300
• Source Dataset Name: FICUS49499 Metagenome Czech Republic combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13618
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Czech Republic: South Bohemian Region
• Coordinates
  • Lat. (^o): 49.043
  • Long. (^o): 13.6183

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000214	Metagenome / Metatranscriptome	1570	Y
F002165	Metagenome / Metatranscriptome	588	Y
F003631	Metagenome / Metatranscriptome	476	Y
F033517	Metagenome / Metatranscriptome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310686_10969730011	F003631	GAG	LARVEAALSGRLADKLLNRPLIAKLFTAKCMELLLNLAWVLLVLPAYWLWRGDAGARAARRVSPLQGLLALGCGLVLLFPVVSASDDLHAMRAEMEDSSISKHTVRQAGSEKNSAWVNRLQGPAAAVTSVVRLAAPETRLLEVSVVESTPLARAWVLRAGRAPPLSFLG
Ga0310686_10969730012	F033517	N/A	CEANRIDGSVAVTNATADDMDLTFDVKAVAENGRATEIGYQHFPLKARTVGMTLPFGETLPYGGYVIYVNVVGEVAKRNAIYRQQMKTPGPLQVVVGP
Ga0310686_1096973005	F000214	AGG	MKNVYEVLRQKEMELTRLEKEVEALRLVAPLLSEGMELNSDMVKPALATAVNGPQQPIRIPSAPVVAAAAAQPVRAAGWDDTAKRWP
Ga0310686_1096973007	F002165	GGA	MTDDYGERVEDVMARQALEIERMRDAFTLLGVNPCAWCKKFVRRSDPGAMFDAGELICYGCILEWWPQRSAQLSGKEHENLEGKLVFWLRDYHRAETFKDPAKLPESSLQELNIVANCLECHGTGKSLGEDNCRFCEGRGTVWVIVPRKK