Scaffold Ga0310686_108577619

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0310686_108577619

Scaffold Ga0310686_108577619

Overview

Basic Information
Taxon OID	3300031708 Open in IMG/M
Scaffold ID	Ga0310686_108577619 Open in IMG/M
Source Dataset Name	FICUS49499 Metagenome Czech Republic combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2874
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location Name	Czech Republic: South Bohemian Region
Coordinates	Lat. (^o)	49.043	Long. (^o)	13.6183	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002897	Metagenome / Metatranscriptome	522	Y
F017679	Metagenome	239	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310686_1085776192	F017679	AGG	MDKTPQPRRKQSRSDLIHLRSLPSIRPASKIGQVMWAWEEIEAGLAAGMKLKEVWEAASRDGLVMSYPQFRVYMSRLRRRRKQLVASVEQPPPGVANEGLSLLDSRPADPFNNLREQREKKKQSGFEYDPFSIDKNLIG
Ga0310686_1085776193	F002897	GAGG	MAQRAIRFSETTDKGIQEAARKRGFSSPTAFIRHSVEQELSGRSEELVGAEERLAASTEQVRREVFRLGRAQQALFAFVDSLAKVLLTCVPEPGGEAMEAAVARARGRHARLLKSAGQAMVGDSLVAMRDLVNRGEG

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