Scaffold Ga0310686_108534468

Overview

Basic Information

• Taxon OID: 3300031708
• Scaffold ID: Ga0310686_108534468
• Source Dataset Name: FICUS49499 Metagenome Czech Republic combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1365
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Czech Republic: South Bohemian Region
• Coordinates
  • Lat. (^o): 49.043
  • Long. (^o): 13.6183

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014638	Metagenome / Metatranscriptome	261	Y
F058302	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310686_1085344681	F014638	AGG	VGEAVRTAGVPSAVPVSGIDKLGFDAFDVTITVPLNVVMLVGVKVTVNVVLCPGVNVTGGVIPEMLNPVPDSAT
Ga0310686_1085344682	F014638	N/A	VAGVTAVPLKGIDKLGFDAFEVTATVPGKEPAEVGANVTVKVVLCPGVNVTGGVIPEMLNPVPDSATTEIVALVPPVFWIVSV
Ga0310686_1085344683	F014638	N/A	VAGVTAVPLKGIDKLGFDAFEVTVTVPGKEPADVGANVTVNVVLCPAVNVTGGVIPEMLNPVPDAPTAEIVALAPPVFLIVSV
Ga0310686_1085344684	F014638	N/A	MAKLGFDAFEVTVAVPGNVPAEVGANVTVNVVLCPAVNVTGGVIPETVNPAPDSPTAEIVALVPPVLVIVSVWIEVCPTVMFV
Ga0310686_1085344685	F058302	N/A	VPAEVGAKITVKVALCPAVNVTGGVIPEMLNPVPDAATAEIVTLVPPVFVIVSVWLDVCPTVIFV