Scaffold Ga0310686_106441835

Overview

Basic Information

• Taxon OID: 3300031708
• Scaffold ID: Ga0310686_106441835
• Source Dataset Name: FICUS49499 Metagenome Czech Republic combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 84683
• Total Scaffold Genes: 81
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 55 (67.90%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Czech Republic: South Bohemian Region
• Coordinates
  • Lat. (^o): 49.043
  • Long. (^o): 13.6183

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000838	Metagenome / Metatranscriptome	866	Y
F003084	Metagenome / Metatranscriptome	508	Y
F024747	Metagenome / Metatranscriptome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310686_1064418353	F003084	GGAGG	MSGKQAVLAVLVIGMSILGATAAAQDEKNDLSGSIGRIFISDQGLTGPNAPTINPVIHSGNGLSFEIDYARRLLGHDIYSISGEIPAVFNLDEKLNAGGPVVPTNYKQIFVTPALRANLFPGTDVSPWVSFGGGFGHFSENKDLLYYGANPAGSSTTGVIQGGLGLDVRPFGHRMRHFSIRGEVRDFYSGEPNFPLADTGKSRQHNYFVGGGLMWHF
Ga0310686_10644183547	F024747	AGGA	VRGKLQTISLTGGLLGVPKPLDCGTQVKLMFLTGSGSVLGVAEMLSPVTWSLQPFKFVKLYDDDEIRLQAAIQSSLDRTRRTLGQSEEYRSW
Ga0310686_10644183549	F000838	N/A	MERGEDLPVQSEWIVFTIALALVGIFNVALTFLPRSWIARVCKKDRDDQKLFSAPLKLLGVFTAIFYVLALVAYFASHSWNLNLQLMLMLCPMYLVKMTIDPPPVFIFFLLAPMNAAVFGALGATLGYARLAFRRRH