NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310686_106249625

Scaffold Ga0310686_106249625


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_106249625 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22729
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (52.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003842Metagenome / Metatranscriptome466Y
F006234Metagenome / Metatranscriptome378Y
F040198Metagenome / Metatranscriptome162Y
F090720Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0310686_10624962512F040198N/AVPDLYGFPRLEDQPYVCHSGSQSGISCAFELKNPARTKILPYSCLLCIDLLGDCLVTLRYTFADVEISLGRDFPGRSQFLDDLANFRVARVKESRQVRVRVITEPASEKTEVY
Ga0310686_10624962514F003842GAGMASAKETRQSTVEPVKWSFSADGKQLSIDDFLETYRKDGIFYEGKEQWLKGVTKVTWENFFLICTEELDDISQRAAKMLIVYCLETVEEVASRIRGPVAAAKITEAMKKEFEEQYDNRVYQFQWAMRHDAIRDAVTNAVLNRWGK
Ga0310686_10624962523F090720GGAGMKTKRIVGTTILLWGLSATARATVVMHDPIHTVLNIAQQVYGQVKQEMQHAEDISKYATMIQKQLEQINQLTNIINQDVEQLRRFGNPDTYVNMLGLNQLFEEVNSIKSGVGKTVSDFSSAANGISALKYTGQGLYQDVSNLSDKFGQKVNYNTTSFKKFGVIQDMNDDYNRQLAAVNQAFDLLENDVRKTAGQINSAGSLVETEKLKAKLQALQGNLDSNMNRASVAALKVLVQSEVNRNDQARLQEAARQRRTQEMLTEDQQLSSLGGELLGPSSGN
Ga0310686_10624962524F006234N/AMRRIGIAISLVLAGCTVGPTVPKGELTVQGKGSEALTNDGDPLISSGIDARKVPVEFAKGYTKGVSDQVKRTYWARQDAQKTADDDLEGRIRYYNATIPERQDSNGVIRVQREVVIPIVE
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