Scaffold Ga0310686

Basic Information
Taxon OID	3300031708 Open in IMG/M
Scaffold ID	Ga0310686_106238461 Open in IMG/M
Source Dataset Name	FICUS49499 Metagenome Czech Republic combined assembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300031708 Open in IMG/M

Scaffold ID

Ga0310686_106238461 Open in IMG/M

Source Dataset Name

FICUS49499 Metagenome Czech Republic combined assembly

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	88500
Total Scaffold Genes	77 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	65 (84.42%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

88500

Total Scaffold Genes

77 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

65 (84.42%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location Name	Czech Republic: South Bohemian Region
Coordinates	Lat. (^o)	49.043	Long. (^o)	13.6183	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Czech Republic: South Bohemian Region

Coordinates

Lat. (^o)

49.043

Long. (^o)

13.6183

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000249	Metagenome / Metatranscriptome	1459	Y
F001709	Metagenome / Metatranscriptome	648	Y
F004329	Metagenome / Metatranscriptome	443	Y
F017346	Metagenome / Metatranscriptome	241	Y
F019610	Metagenome / Metatranscriptome	228	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310686_10623846135	F000249	GGAGG	MKTLAWILVFPLLICTLTAAQSSPSASSPQDTGTKTQDLGTKAEDRMFFPHDMFWGWAQFDIAPPHNEIDPNICAGNAGQYGGVNAPCSMFARYMLSGMLEVRPFGRGELRRFMVFGAPAFLFGKTIPQTLYTWSPDAIGIEHSWGVGIFIAKGFEFRVTQHFLFDRLGARDTHLGVADLGNNGPWGRYATVGVRKSFGTRRW
Ga0310686_10623846136	F001709	GGAG	MPQEVSVSYQAIKSKVYRLIDTLVVGEKSEVEVQESIRRWWELIHPADRPIAQKYLLLVLGRSFQALDAIEEGLTDATNHEALQTYHSAKEFKLVERVVKQSGRSAIFSNSI
Ga0310686_10623846146	F017346	N/A	MGIFDSFRKEEVTGSKVLVGQLSPKFDEHFKSDLRVYKRFYPAASGATFISVAELRGAAGHNYDVLHLFCDMDGSGVIADASGDRITGTELLKAAVDSGVKLLWMGNDNPQESYDAGFKTKGLKINVVLTLRRLGSNTSLFLDSLLAKMQAGDTFAKAWSVASQPEGKSVQPDVPHTISSLGRGSVILK
Ga0310686_10623846148	F019610	GAGG	MRSYLAKLTPKAQMLLAIPLIAITYPVVMILLPAIIRALLPSVVRSVLSLL
Ga0310686_1062384615	F004329	GAG	MEPSLRREHPSKGAAIPFVAAIAIVLLCAFQFGDRNELNKMPFAKVQPLASDLEKAERLAKQGNIDLFAGQHEPGKVVTLRGEVTDANCYLGTHIHAYDHAFCAKLCAAAGGPLVFIVDQDSEVYVVMSERNGIRLPDNVLDRIGVPGIVVRGKVRSTDGVRALAIEGLAE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310686_106238461

Overview

Ecosystem & Geography

Associated Families

Sequences