Scaffold Ga0310686_105918441

Overview

Basic Information

• Taxon OID: 3300031708
• Scaffold ID: Ga0310686_105918441
• Source Dataset Name: FICUS49499 Metagenome Czech Republic combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56549
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (70.31%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Czech Republic: South Bohemian Region
• Coordinates
  • Lat. (^o): 49.043
  • Long. (^o): 13.6183

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001177	Metagenome / Metatranscriptome	756	Y
F035852	Metagenome / Metatranscriptome	171	Y
F042487	Metagenome / Metatranscriptome	158	N
F056132	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310686_10591844112	F056132	GGA	MKKLLSLGLIMWSSAANAQNAPATSTATQDQGQARQFGMLVGGTATQYDLCVKKGFLAKSDQSAEEAAKSIFEKMRANGGPDQSAYVQEGWDMMKKEIFSHESFYTQEKCAGVGKQWAKIVATMRKK
Ga0310686_10591844136	F001177	GGAGG	MAIKRPTKGKGTPSHKPVASAPLRHVDVKVPQQMVLGQVYVGWLCKNRSCGRVIAIAASAPGGKAATDFDDQLTAIKCPHCQDENLYRWSARSEQNYALSGSP
Ga0310686_10591844141	F035852	N/A	MLNASVGLRSIWKTAADLETYDTLRGLSVWPSLNKAIEAQIARMAVANENPNFEALATMTRLRAGQSLRFVLTWSFWLAVSLTFLVMTGSVAIIPYAHEIADTHGLKWIHALNLAGVGAFALCMLSYMFVIYAALVSRYGKHIIQPRIDALTRGS
Ga0310686_10591844155	F042487	AGAAGG	MNKWSFVAASAALAVAGMGASVSAQAHPYLTVGVDVPAVAVVGPFGRAPVYCGPYCYEHGRYWRRDYDRYRFDRFPRERWYRR