Scaffold Ga0310686_105523945

Overview

Basic Information

• Taxon OID: 3300031708
• Scaffold ID: Ga0310686_105523945
• Source Dataset Name: FICUS49499 Metagenome Czech Republic combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 96079
• Total Scaffold Genes: 89
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (53.93%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Czech Republic: South Bohemian Region
• Coordinates
  • Lat. (^o): 49.043
  • Long. (^o): 13.6183

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000378	Metagenome / Metatranscriptome	1211	Y
F006072	Metagenome / Metatranscriptome	382	Y
F043595	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310686_10552394516	F000378	GGAGG	MEDRAPVVSPSVSQQSSSQQAATSKHCEGRGAWVLTAYGISGLALFGVLAYFFSDFIAH
Ga0310686_10552394543	F043595	N/A	MGILFYFGTFWLAGLAQWMVLKRITREVNEHLPDGEQYTTSMWAFSPRSARSPINEIKIWRLHRQFYRESYLPWFHLATWILMIVFFILCVQFDRSHSIAHPQ
Ga0310686_10552394549	F006072	AGGAGG	VSKTAAVVLAFLSLVLVAAPSRAQLLPSGNVYVGGAYADSVDVINRYTFRGWEANAEDMYFTRHPYLGIVADGNGLYRLGVQQYSILIGPRVSMNYGKWRPFFQVMGGVQRDASGGAAHYPIAEDIGGGVDRKFQFLFLKHFAWRVEFDYMHTRLLHASQDDYRGSTGLVWRF