NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310686_104387370

Scaffold Ga0310686_104387370


Overview

Basic Information
Taxon OID3300031708 Open in IMG/M
Scaffold IDGa0310686_104387370 Open in IMG/M
Source Dataset NameFICUS49499 Metagenome Czech Republic combined assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3315
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.043Long. (o)13.6183Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007384Metagenome / Metatranscriptome352Y
F038832Metagenome / Metatranscriptome165Y
F067005Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0310686_1043873701F007384N/AMMKIIAAAAFVAAPWQPTQAQAIVGSIPEEFRGDWCQENTKDNIFKPGGCKLKAGSLSIDRMTLDTGRLSCGFDSGTASDGTLQMRMLCTDPEDKESLIYGAQLKLLPGKKIELVLEPVDQK
Ga0310686_1043873708F067005GGAMSDTPTQRGPPARPDRVLAAHERRARLIAQLHRQAIATANDLLTQRKAIEAGHAKDAQRRKTEAWLIAAGAIIAALGCILALWQ
Ga0310686_1043873709F038832N/ALMIVAIAMLASPHAYGQAGKGQIGTQGTSGKPSGPAVGGGDRTLIPPTQPALAPPSDSLSNLAGGGYADPNYVPPAERSKKSTRHRVVRAPRARTSRRFEQYSAYPSFAFGYYCWYCDY
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