Scaffold Ga0310686_104187940

Overview

Basic Information

• Taxon OID: 3300031708
• Scaffold ID: Ga0310686_104187940
• Source Dataset Name: FICUS49499 Metagenome Czech Republic combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36979
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Czech Republic: South Bohemian Region
• Coordinates
  • Lat. (^o): 49.043
  • Long. (^o): 13.6183

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001867	Metagenome / Metatranscriptome	624	Y
F002346	Metagenome / Metatranscriptome	568	Y
F006802	Metagenome / Metatranscriptome	364	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310686_1041879403	F002346	N/A	MKLFDQFCAAALFLLAIVDCLLVPRTYTGRIWIFGTGLALLFTAMLNVLRLRNSRGVQGLKLFCITANVTMLVFAIALMVSIGKSRTLQYPQIPLVAALLLAETAFSLRKNP
Ga0310686_10418794031	F006802	N/A	MPLILGLTVVLSVGIGVFSAYVAVFGILQACGRAAQQPRPVEARPQLVLVPTQNHASGD
Ga0310686_1041879406	F001867	N/A	MPRCSVVKNSPDQVWFQKYLEFHCDDCGSDTGFRSRRRTFSERYLLPIFLLQPVRCAECFRRDYRFLLVPVKARLPEAIKKVTTPAPRPDRNVA