Scaffold Ga0310686_102447334

Overview

Basic Information

• Taxon OID: 3300031708
• Scaffold ID: Ga0310686_102447334
• Source Dataset Name: FICUS49499 Metagenome Czech Republic combined assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 497427
• Total Scaffold Genes: 477
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 352 (73.79%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Czech Republic: South Bohemian Region
• Coordinates
  • Lat. (^o): 49.043
  • Long. (^o): 13.6183

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000482	Metagenome / Metatranscriptome	1089	Y
F000840	Metagenome / Metatranscriptome	866	Y
F005676	Metagenome / Metatranscriptome	393	Y
F006104	Metagenome / Metatranscriptome	381	Y
F009977	Metagenome / Metatranscriptome	310	Y
F016551	Metagenome / Metatranscriptome	246	Y
F021013	Metagenome / Metatranscriptome	221	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310686_102447334183	F006104	GGAGG	MDHFVRLQLVGRVTYYVGWIALVCGGLVHLNVATTLFATMQLSQRNLFEAGVVCFLICIASELRARDFAGKDMPSVLKKAA
Ga0310686_102447334226	F000840	N/A	MITLNERIAKTQRLLRRLEEDQPYLSVRLSALGADHRRSANAFAARMRAEAEAELQRLLAEQALPMEWTVPQPAD
Ga0310686_102447334231	F021013	GAG	VHLGNCGPGRFISYPTANQFDVLCPRTNRIRLIRVDADSRELQNLDIVLPWERRVGAAMAIETSDSQVISIVRGDGAVFEMNIATQQFTETTAHPVLPNRVPPATWPTSPDGSRVYLGYNTDYDHNYDNRFYLDYGRSPNLRPSNALATEFRVLDTRTWKKIGTIKTKMPFWSAVTRNDGTILYAMAPQKHSILVIDAVKMHQSNILKIGGAPTLALVAP
Ga0310686_102447334251	F009977	AGGAGG	MNLLQWLSQHAVPFTLILAYVPLIATVVTTVVSLILARATVRYTESSDRSLALAREQFEREWAPELHIKLERLSSSDARILATNLAKISVLMQMVQLRKLSMAVPSLRYFLNEPLVGGTTWSEDLGKRFFACTGENYEGQIAVSITFYAAGRMYRTDWFRSQVQVHNSKLVRLDPVNISARRVRALEPRNGSGSTRRELVRDVVRNAADSDGKAAAAAVGTREG
Ga0310686_10244733426	F000482	N/A	VNVDQTPVTKVSEVTLPGLRSSRKILMMQVSRTHLAIALGSGALLVLVFLGYLYWLSNQPPVLSRSEERDPLTQMPISITMNPFRDRTIERTANSFIAEMRDGNCRKLLGQWERDYRKKRADFLCNSETQHPLISWTLVEWEDAPPLVILHYKGQRYSTPAQDSTYKDLFSVTEEKKDDGWTVTKYDSFY
Ga0310686_102447334281	F005676	GGA	MTPIPMPPDALETLRQVNENLRSVLLRLRPERKHCSSIRPQDFSDILSQLLRAAECLRRPKPTHSKATVALEKESLEYGSNLEKLKHFLPDVQVRLLAEKSRLETARTHVATAAAWAQARKKAL
Ga0310686_102447334437	F016551	AGGA	MSIQEVSAERFAQLFHCYHQALVDDSGSASNLRMKDAWEHVPPSEKSKLIAAARLALLEVELVPGERQSRRYFAKPGEAEWGC